miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|238181303|gb|GR054916.1|GR054916 GATTAGAGAAAGGAAAATATCTTTAGAAGATAAACTAGTAGAGTACATAAACAACAATCCCATCACAGCAGCAGACTAAT
TTTTCATTTCTTTTTTTCCTACTCCAGAAAATACCCCATTACAAAAAGAAAAAAAAAAGATATACCATTAAACAAAAGGA
AGGGAAACTATTTATCATCATAAAAGGGTAAACATAGTTGCGAGGGGATGGATTACATAATTTCATAAGCTTCCATTTTT
CATCTTCACTCGTCGTCGTCGTCATCATCATCATCGGCGCTGCCGTCCTCGTCATCATCGTCGTCTTCGTCATCGTTCAC
TTCCGACCTTGACTTGTCGGACTCCTCTTCTGTGGGCCCATCGCTCAATTTTTTGTTGTAAGCCTGAAGGGTTTTTTCAT
ACTCGCCCTTTCGCTTCTCAGCCTTGGCTATGTAAGGAGCTTTTTCAGCTTCTGTGAGAGATTTCCACTTGTCACCACCA
GCTTTCCCAACAGCGGCGACTGATTTGTTGTTTGGGTGCTTCTCTTTGTACGTTTTCCTGAAGTCCTCCATGAAGACGAA
GAAGGCACTAGCAGCCTCTTTGGCTTGTTTGGGTCCTTAACCGGCTTTCC




Most similar to sp|P40619|HMGL_IPONI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
          Length = 144

 Score =  149 bits (376), Expect = 1e-35
 Identities = 77/99 (77%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
 Frame = -3

Query: 608 KAG*GPKQAKEAASAFFVFMEDFRKTYKEKHPNNKSVAAVGKAGGDKWKSLTEAEKAPYI 429
           KA   P + K   SAFFVFMEDFRKTYKEKHPNNKSVA VGKAGGDKWK LT AEKAP+I
Sbjct: 28  KAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFI 87

Query: 428 AKAEKRKGEYEKTLQAYNKKLSDGPT-EEESDKSRSEVN 315
           +KAEKRK EYEK LQAYNKK + G   EEESDKSRSEVN
Sbjct: 88  SKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEVN 126